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NemaBLAST - vs EST contigs & genes
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Enter a GenBank accession ID in the box to the right to fetch the FASTA sequence for the BLAST below (ex. BG232754). Or you can manually enter your sequence in the text box below:
Note: This feature is dependant on the availability of GenBank's web server. If you have trouble retrieving the entry please enter your query sequence by hand below.
Please enter your sequence here (must be in FASTA format)
Reset Entire Page
Select all the species you wish to include in your blast database by selecting individually or by clade from the menu below. Also be sure to enter your query sequence in the window above, either manually or fetch the sequence using the GenBank accession number. Next, choose the version of BLAST you want to run, and select whether or not to filter and mask your query. And be sure to enter your email address in the appropriate text box. Then finally press the BLAST Search button and your job will begin.
Select a BLAST type to use on this query:
BLASTN (DNA query sequence)
TBLASTN (Protein query sequence)
Select from the following options:
Filtering:
Do not filter query sequence with DUST/SEG
Filter query sequence with DUST/SEG
Masking:
Do not mask query sequence with RepeatMasker
Mask query sequence with RepeatMasker
Please enter your email address
(for tracking your query, and emailing your BLAST output)
Must be in the form
user@host.edu
:
Use these buttons to select an entire clade at once
Use these buttons to select or deselect all databases
Press the BLAST Search button to execute your job
(be sure to enter your email address in the appropriate box above)
Select NemaGene Database(s) to BLAST
:
Clade I
Trichinella spiralis
Trichuris vulpis
Trichuris muris
Xiphinema index
Clade III
Ascaris suum
Brugia malayi
Brugia malayi_Annotation
Dirofilaria immitis
Onchocerca flexuosa
Toxocara canis
Clade IVa
Parastrongyloides trichosuri
Strongyloides ratti
Strongyloides stercoralis
Clade IVb
Ditylenchus africanus
Globodera pallida
Globodera rostochiensis
Heterodera glycines
Heterodera schachtii
Meloidogyne arenaria
Meloidogyne chitwoodi
Meloidogyne hapla
Meloidogyne incognita
Meloidogyne javanica
Meloidogyne paranaensis
Pratylenchus penetrans
Radopholus similis
Zeldia punctata
Clade V
Ancylostoma caninum
Ancylostoma caninum_Annotation_and_EST
Ancylostoma ceylanicum
Caenorhabditis elegans_wormbaseV160
Caenorhabditis remanei
Haemonchus contortus
Nippostrongylus brasiliensis
Ostertagia ostertagi
Pristionchus pacificus
Last updated: 07-25-07
Nematode Net v2.0
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Washington University
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