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NemaBLAST - vs reads grouped by library
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Enter a GenBank accession ID in the box to the right to fetch the FASTA sequence for the BLAST below (ex. BG232754). Or you can manually enter your sequence in the text box below:

Note: This feature is dependant on the availability of GenBank's web server. If you have trouble retrieving the entry please enter your query sequence by hand below.
Select all the species that you wish to include in your custom database individually or by clade from the menu below. You will be prompted on the next page to specify which library(s) per selected species you want to include (all libraries for each selected species will be checked by default). Be sure to enter your query in fasta format in the window below, either manually or by fetching a GenBank accession id. Once databases have been chosen and your query is entered, press the Build BLAST Query Page button to continue.
Species Selection
Clade I
Trichinella spiralis
Trichuris vulpis
Xiphinema index
Clade III
Ascaris suum
Brugia malayi
Dirofilaria immitis
Toxocara canis
Clade IVa
Parastrongyloides trichosuri
Strongyloides ratti
Strongyloides stercoralis
Clade IVb
Globodera pallida
Globodera rostochiensis
Heterodera glycines
Heterodera schachtii
Meloidogyne arenaria
Meloidogyne chitwoodi
Meloidogyne hapla
Meloidogyne incognita
Meloidogyne javanica
Meloidogyne paranaensis
Pratylenchus penetrans
Pratylenchus vulnus
Radopholus similis
Zeldia punctata
Clade V
Ancylostoma caninum
Ancylostoma ceylanicum
Caenorhabditis japonica
Caenorhabditis remanei
Haemonchus contortus
Ostertagia ostertagi
Pristionchus pacificus
Clade Selection
Nem-No-Ele Database*

*NEM-NO-ELE: This database contains all known nematode EST sequences from NCBI's GenBank from all species except C. elegans. This database is only current through December, 2006. Including this database in your query will allow you to BLAST some data not sequenced at the GSC - but may also cause duplications to be found for GSC sequence (i.e. our internal databases and Nem-No-Ele may have the same data in common).
NemaBLAST
This interface uses WU-BLAST 2.0 (Gish, W. 1994-2002). Washington University BLAST (WU-BLAST) version 2.0 is a powerful software package for gene and protein identification, using sensitive, selective and rapid similarity searches of protein and nucleotide sequence databases. The feature list for the licensed version of WU-BLAST 2.0 is large and continues to expand. Please visit http://blast.wustl.edu/ for more information on this software package.
Last Update: 07-25-2005

 
Nematode Net v2.0
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