Pratylenchus penetrans: 338 contigs; 45802 codons AMINO ACID FREQUENCIES ====================== A Ala 3173 6.92 % C Cys 925 2.01 % D Asp 2448 5.34 % E Glu 3075 6.71 % F Phe 1966 4.29 % G Gly 3189 6.96 % H His 1086 2.37 % * stop 0 0 % I Ile 2659 5.8 % K Lys 3465 7.56 % L Leu 3828 8.35 % M Met 1189 2.59 % N Asn 2073 4.52 % P Pro 2068 4.51 % Q Gln 2058 4.49 % R Arg 2840 6.2 % S Ser 2921 6.37 % T Thr 2255 4.92 % V Val 2707 5.91 % W Typ 531 1.15 % Y Tyr 1346 2.93 % CODON USAGE FREQUENCIES ======================= A Ala GCA 996 2.17 % A Ala GCC 935 2.04 % A Ala GCG 420 0.91 % A Ala GCT 822 1.79 % C Cys TGT 394 0.86 % C Cys TGC 531 1.15 % D Asp GAC 956 2.08 % D Asp GAT 1492 3.25 % E Glu GAA 1858 4.05 % E Glu GAG 1217 2.65 % F Phe TTC 1038 2.26 % F Phe TTT 928 2.02 % G Gly GGA 1118 2.44 % G Gly GGC 947 2.06 % G Gly GGG 373 0.81 % G Gly GGT 751 1.63 % H His CAC 404 0.88 % H His CAT 682 1.48 % * stop TAA 0 0 % * stop TAG 0 0 % * stop TGA 0 0 % I Ile ATA 426 0.93 % I Ile ATC 879 1.91 % I Ile ATT 1354 2.95 % K Lys AAA 1923 4.19 % K Lys AAG 1542 3.36 % L Leu CTA 283 0.61 % L Leu CTC 573 1.25 % L Leu CTG 667 1.45 % L Leu CTT 789 1.72 % L Leu TTA 434 0.94 % L Leu TTG 1082 2.36 % M Met ATG 1189 2.59 % N Asn AAC 744 1.62 % N Asn AAT 1329 2.9 % P Pro CCA 909 1.98 % P Pro CCC 336 0.73 % P Pro CCG 412 0.89 % P Pro CCT 411 0.89 % Q Gln CAA 1294 2.82 % Q Gln CAG 764 1.66 % R Arg AGA 396 0.86 % R Arg CGA 578 1.26 % R Arg AGG 290 0.63 % R Arg CGC 565 1.23 % R Arg CGG 309 0.67 % R Arg CGT 702 1.53 % S Ser AGC 453 0.98 % S Ser TCA 705 1.53 % S Ser TCC 495 1.08 % S Ser AGT 378 0.82 % S Ser TCG 419 0.91 % S Ser TCT 471 1.02 % T Thr ACA 790 1.72 % T Thr ACC 517 1.12 % T Thr ACG 368 0.8 % T Thr ACT 580 1.26 % V Val GTA 346 0.75 % V Val GTC 664 1.44 % V Val GTG 757 1.65 % V Val GTT 940 2.05 % W Typ TGG 531 1.15 % Y Tyr TAC 530 1.15 % Y Tyr TAT 816 1.78 % # - number of times the codon is observed % - relative aa / codon usage value (usage of a given codon among its redundant set, i.e. the set of codons which code for this codon's amino acid).