Pratylenchus penetrans: 213 partial CDSs (213 contigs; 195 clusters; 28302 codons) AMINO ACID FREQUENCIES ====================== F Phe 1243 4.39 % S Ser 1718 6.07 % T Thr 1391 4.91 % N Asn 1270 4.48 % K Lys 2301 8.13 % * stop 0 0 % E Glu 2009 7.09 % Y Tyr 905 3.19 % V Val 1801 6.36 % Q Gln 1170 4.13 % M Met 638 2.25 % C Cys 550 1.94 % L Leu 2357 8.32 % A Ala 1855 6.55 % W Typ 347 1.22 % P Pro 1155 4.08 % H His 658 2.32 % D Asp 1606 5.67 % I Ile 1671 5.9 % R Arg 1694 5.98 % G Gly 1963 6.93 % CODON USAGE FREQUENCIES ======================= F Phe TTT 546 1.92 % F Phe TTC 697 2.46 % S Ser AGT 242 0.85 % S Ser AGC 276 0.97 % S Ser TCG 272 0.96 % S Ser TCA 398 1.4 % S Ser TCC 286 1.01 % S Ser TCT 244 0.86 % T Thr ACA 460 1.62 % T Thr ACC 344 1.21 % T Thr ACG 228 0.8 % T Thr ACT 359 1.26 % N Asn AAC 489 1.72 % N Asn AAT 781 2.75 % K Lys AAG 1063 3.75 % K Lys AAA 1238 4.37 % * stop TGA 0 0 % * stop TAA 0 0 % * stop TAG 0 0 % E Glu GAG 827 2.92 % E Glu GAA 1182 4.17 % Y Tyr TAC 357 1.26 % Y Tyr TAT 548 1.93 % V Val GTG 534 1.88 % V Val GTT 609 2.15 % V Val GTA 211 0.74 % V Val GTC 447 1.57 % Q Gln CAG 433 1.52 % Q Gln CAA 737 2.6 % M Met ATG 638 2.25 % C Cys TGT 227 0.8 % C Cys TGC 323 1.14 % L Leu CTG 423 1.49 % L Leu CTC 355 1.25 % L Leu TTG 689 2.43 % L Leu CTT 484 1.71 % L Leu TTA 239 0.84 % L Leu CTA 167 0.59 % A Ala GCC 544 1.92 % A Ala GCA 587 2.07 % A Ala GCG 249 0.87 % A Ala GCT 475 1.67 % W Typ TGG 347 1.22 % P Pro CCG 239 0.84 % P Pro CCA 489 1.72 % P Pro CCC 201 0.71 % P Pro CCT 226 0.79 % H His CAC 240 0.84 % H His CAT 418 1.47 % D Asp GAC 664 2.34 % D Asp GAT 942 3.32 % I Ile ATC 603 2.13 % I Ile ATT 825 2.91 % I Ile ATA 243 0.85 % R Arg CGA 342 1.2 % R Arg AGA 208 0.73 % R Arg CGC 387 1.36 % R Arg AGG 151 0.53 % R Arg CGT 449 1.58 % R Arg CGG 157 0.55 % G Gly GGA 652 2.3 % G Gly GGT 486 1.71 % G Gly GGG 207 0.73 % G Gly GGC 618 2.18 % # - number of times the codon is observed % - relative aa / codon usage value (usage of a given codon among its redundant set, i.e. the set of codons which code for this codon's amino acid).