Nematode Net

Clustering Data Text Files
The following link will take you to the clustered sequence FTP site. The files provided there are flat tab-delimited versions of clustering data. There are three types of files provided. Files with the name SUMMARY in the title have the contig consensus sequences. Files with cluster_groups in their title contain the cluster that each contig belongs to. Files with the name HISTORY in the title have the EST membership of each contig.
CLUSTERING FILES

GFF Data Files
The following link will take you to the GFF FTP site.
GFF FILES

WGS Data Files
The following link will take you to the Whole Genome Shotgun FTP site.
WGS FILES

How to use anonymous FTP.
You may ftp to our ftp site and pick up traces in this manner:

ftp genome.wustl.edu
login: anonymous
passwd: (your_e-mail_adress)
cd /pub/est/pnp
bin
cd (to the trace of interest)
get (trace of interest)

So, using kp01a05.y1 as an example, we will walk through downloading this clone's files:

ftp genome.wustl.edu	Enter command from a DOS or UNIX prompt to access the FTP site.
login: anonymous	You may access data via an anonymous account.
passwd: johndoe_not@home.com	Enter your email address at the password prompt.
bin	Sets system to binary mode.
cd /pub/est/pnp/kp/kp01	Change directory to the project and appropriate clone you wish to dowload.
ls -al	This command will list the contents of whatever directory you are in.
get kp01a05.y1.Z	Downloads the compressed clone trace image file.
get kp01a05.y1.exp	Downloads the experiment file.
get kp01a05.y1.seq	Downloads the sequence file (FASTA).
help	Help displays a list of FTP commands - help (command) reveals more information.
quit	Quit ends the FTP sessions - downloaded files are in the local directory you are in.

Download traces
Download traces (HTTP link for users behind firewalls)