When publishing or presenting results using EST sequences from the Washington University Parasitic Nematode EST Sequencing Project, please use the following citation:

Wylie, T., J.C. Martin, M. Dante, M. D. Mitreva, S. W. Clifton, A. Chinwalla, R. H. Waterston, R. K. Wilson, and J. P. McCarter. 2004. “Nematode.net: a Tool for Navigating Sequences from Parasitic and Free-living Nematodes,” 32:D423-D426 Nucleic Acids Research, 2004.

For reprint requests contact: nematode@watson.wustl.edu

A Bibliography of Parasitic Nematode Genome References: (last update 2/2002)

Blaxter, M. L., N. Raghavan, I. Ghosh, D. Guiliano, W. Lu, S. A. Williams, B. Slatko, and A. L. Scott. 1996. Genes
expressed in Brugia malayi infective third stage larvae. Molecular and Biochemical Parasitology 77:77-93.

Blaxter, M., M. Aslett, D. Guiliano, J. Daub, and the Filarial Genome Project. 1999. Parasitic helminth genomics.
Parasitology 118:S39-S51.

Blaxter, M. 2000. Genes and genomes of Necator americanus and related hookworms. International Journal of
Parasitology 30:347-355.

The C. elegans Sequencing Consortium. 1998. Genome Sequence of the nematode C. elegans: a platform for
investigating biology. Science 282:2012-2018.

Daub, J., A. Loukas, D. I. Pritchard, M. Blaxter. 2000. A survey of genes expressed in adults of the human
hookworm, Necator americanus. Parasitology 120:171-184.

Dautova, M., M. N. Rosso, P. Abad, F. J. Gommers, J. Bakker, G. Smant. 2001. Single pass cDNA sequencing - a
powerful tool to analyse gene expression in preparasitic juveniles of the southern root-knot nematode Meloidogyne incognita.
Nematology 3:129-139.

Fraser, A. G., R. S. Kamath, P. Zipperlen, M. Martinez-Campos, M. Sohrmann, J. Ahringer. 2000. Functional genomic
analysis of C. elegans chromosome I by systematic RNA interference. Nature 408:325-330.

Hoekstra, R., A. Visser, M. Otsen, J. Tibben, J. A. Lenstra, and M. H. Roos. 2000. EST sequencing of the parasitic
nematode Haemonchus contortus suggests a shift in gene expression during transition to the parasitic stages. Molecular and
Biochemical Parasitology 110:53-68.

Jones, S. J. M., D. L. Riddle, A. T. Pouzyrev, V. E. Velculescu, L. Hillier, S. R. Eddy, S. L. Stricklin, D. L. Baillie, R.
Waterston, and M. A. Marra. 2001. Changes in gene expression associated with developmental arrest and longevity in
Caenorhabditis elegans. Genome Research 11:1346-1352.

Kent, W. J., A. M. Zahler. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae - C.
elegans genomic alignment. Genome Research 10:1115-1125.

Kim, S. K., J. Lund, M. Kiraly, K. Duke, M. Jiang, J. M. Stuart, A. Eizinger, B. N. Wylie, G. S. Davidson. 2001. A gene
expression map for Caenorhabditis elegans. Science 293:2087-2092.

Lizotte-Waniewski, M., W. Tawe, D. B. Guiliano, W. Lu, J. Liu, S. A. Williams, and S. Lustigman. 2000.
Identification of potential vaccine and drug target candidates by expressed sequence tag analysis and immunoscreening of
Onchocerca volvulus cDNA libraries. Infection and Immunity 68:3491-3501.

Maizels, R. M. K. K. A. Tetteh, A. Loukas. 2000. Toxocara canis: genes expressed by the arrested infective larval
stage of a parasitic nematode. International Journal of Parasitology 30:495-508.

Marra, M. A., L. Hillier, and R. H. Waterston. 1998. Expressed sequence tags - ESTabilishing bridges between
genomes. Trends in Genetics 14:4-7.

McCarter, J. Abad, J. T. Jones, and D. Bird. 2000a. Rapid gene discovery in plant parasitic nematodes via expressed
sequence tags. Nematology 2:719-731.

McCarter, J. P., D. McK. Bird, S. W. Clifton, R. H. Waterston. 2000b. Nematode gene sequences, December 2000
Update. Journal of Nematology 32:331-333.

McCombie, W. R., M. D. Adams, J. M. Kelley, M. G. Fitzgerald, T. R. Utterback, M. Khan, M. Dubnick, A. R.
Kerlavage, J. C. Venter, and C. Fields. 1992. Caenorhabditis elegans expressed sequence tags identify gene families and
potential disease gene homologues. Nature Genetics 1:124-131.

Moore, T. A., S. Ramachandran, A. A. Gam, F. A. Neva, W. Lu, L. Saunders, S. A. Williams, and T. B. Nutman.
1996. Identification of novel sequences and codon usage in Strongyloides stercoralis. Molecular and Biochemical
Parasitology 79:243-248.

Parkinson J, C. Whitton, D. Guiliano, J. Daub, M. Blaxter. 2001. 200,000 nematode expressed sequence tags on the
Net. Trends in Parasitology 17:394-396.

Popeijus, H., V. C. Blok, L. Cardle, J. Bakker, M. S. Phillips, J. Helder, G. Smant, J. T. Jones. 2000. Analysis of genes
expressed in second stage juveniles of the potato cyst nematodes Globodera rostochiensis and G. pallida using the expressed
sequence tag approach. Nematology, 2:567-574.

Stein, L., P. Sternberg, R. Durbin, J. Thierry-Mieg, J. Spieth. 2001. Wormbase: network access to the genome and
biology of Caenorhabditis elegans. Nucleic Acids Research 29:82-86.

Tetteh, K. K. A., A. Loukas, C. Tripp, and R. M. Maizels. 1999. Identification of abundantly expressed novel and
conserved genes from the infective larval stage of Toxocara canis by an expressed sequence tag strategy. Infection and
Immunity 67:4771-4779.

Unnasch, T. R., S. A. Williams. 2000. The genomes of Onchocerca volvulus. International Journal of Parasitology
30:543-452.

Waterston, R., C. Martin, M. Craxton, C. Huynh, A. Coulson, L. Hillier, R. Durbin, P. Green, R. Shownkeen, N.
Metzstein, T. Hawkins, R. Wilson, M. Berks, Z. Du, K. Thomas, J. Thierry-Mieg, and J. Sulston. 1992. A survey of
expressed genes in Caenorhabditis elegans. Nature Genetics 1:114-123.

Williams, S. A., S. J. Laney, M. Lizotte-Waniewski, L. A. Bierwert. 2002. The Riverblindness Genome Project.
Trends in Parasitology 18:86-90.