NemaGene Clustering
For more information on NemaGene clusters click here.
R. similis, N.brasiliensis, and G. rostochiensis have been recently re-clustered. Older clustering
results from these species can be downloaded from the FTP page. The bottom table details the numbers of
clusters, contigs, and ESTs used in the clustering of each listed species. It also displays the # of ESTs for
each organism present in dbEST as of the listed date to give visitors an idea of how complete a given
clustering is compared to currently available data.
Instructions specific to this page:
NemaGene can be searched by cluster name, contig name, EST name, or by a wildcard search for a putative ID assignment (such as collagen, myosin or kinase). Enter your search term in the box labeled Enter search below:. Then select the appropriate settings from the Search Type: and Species Database: dropboxes. Be aware that if you do not set these dropbox menus your selection will most likely not be found. Click on the Search Clusters button to begin your search. Note that unchecking the HTML Output will cause results to be displayed in plain text format. Also note that certain putative ID searches can lead to large numbers of resulting contigs, and may take awhile to display.
Search
Examples:
|
EST
sample name: |
Enter
Washington University name for an EST
sequenced from the selected species.
The result will display the contig in
which the EST is a member. |
pa29e12.y1 |
Putative
ID: |
Use this field to
search putative IDs assigned to our
contigs by BLAST against GenBank's non-redundant
protein database. Entries may be words
or phrases. |
UBIQUITIN |
NemaGene
contig ID: |
Search by Washington
University contig name. |
AC05240 |
NemaGene
cluster ID: |
Search by Washington
University cluster name: |
AC01000.cl |
|
Search
Type: |
Species
Database: |
|
|
Enter
search below: |
|
HTML
Output
|
|
|
Date: 9/16/2008
Ancylostoma caninum |
4,020 |
5,484 |
9,286 |
80,551 |
AC |
Ancylostoma
ceylanicum |
3,369 |
4,953 |
10,588 |
10,651 |
AE |
Ascaris suum |
9,949 |
17,989 |
39,162 |
56,492 |
AS |
Brugia
malayi |
1,310 |
1,609 |
3,742 |
26,215 |
BM |
Caenorhabditis
remanei |
9,560 |
12,334 |
21,503 |
20,292 |
CR |
Dirofilaria immitis |
1,793 |
2,534 |
3,999 |
4,005 |
DI |
Ditylenchus africanus |
3,808 |
5,214 |
6,528 |
4,847 |
DA |
Globodera pallida |
2,257 |
2,973 |
4,389 |
4,378 |
GP |
Globodera rostochiensis |
6,448 |
9,482 |
15,687 |
11,851 |
GR |
Haemonchus
contortus |
5,058 |
9,842 |
22,152 |
21,975 |
HC |
Heterodera
schachtii |
1,555 |
1,600 |
2,849 |
2,818 |
HS |
Heterodera
glycines |
8,638 |
12,313 |
24,366 |
24,444 |
HG |
Meloidogyne
arenaria |
3,241 |
3,372 |
5,019 |
5,039 |
MA |
Meloidogyne
chitwoodi |
3,578 |
5,880 |
12,187 |
12,218 |
MC |
Meloidogyne
hapla |
6,667 |
11,193 |
24,331 |
24,452 |
MH |
Meloidogyne
incognita |
5,598 |
9,107 |
19,957 |
20,334 |
MI |
Meloidogyne
javanica |
4,827 |
5,172 |
7,594 |
7,587 |
MJ |
Meloidogyne
paranaensis |
2,156 |
2,263 |
3,710 |
3,710 |
MP |
Nippostrongylus brasiliensis |
2,997 |
4,532 |
14,686 |
14,686 |
NB |
Onchocerca flexuosa |
1,476 |
1,665 |
2,124 |
2,124 |
OF |
Ostertagia ostertagi |
2,313 |
4,659 |
7,020 |
7,006 |
OS |
Parastrongyloides trichosuri |
4,324 |
4,934 |
7,914 |
7,963 |
PT |
Pratylenchus penetrans |
420 |
488 |
1,928 |
1,928 |
PE |
Pristionchus
pacificus |
2,603 |
2,654 |
4,979 |
37,195 |
PP |
Radopholus similis |
4,004 |
5,551 |
6,982 |
7,380 |
RS |
Steinernema carpocapsae |
1,387 |
1,592 |
2,015 |
45 |
SC |
Strongyloides
ratti |
4,152 |
5,237 |
14,703 |
27,366 |
SR |
Strongyloides
stercoralis |
3,311 |
3,479 |
10,908 |
11,392 |
SS |
Toxocara Canis |
1,975 |
2,135 |
4,902 |
4,889 |
TX |
Trichinella
spiralis |
3,453 |
5,958 |
10,130 |
25,268 |
TS |
Trichuris muris |
2,650 |
3,735 |
7,170 |
7,102 |
TM |
Trichuris vulpis |
1,224 |
1,690 |
3,062 |
3,063 |
TV |
Xiphinema index |
5,400 |
5,485 |
9,344 |
9,351 |
XI |
Zeldia
punctata |
195 |
202 |
378 |
391 |
ZP |
|
|