Function & Expression : go associations

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[Feb.14.2014]   
Explore our new Nematode Tissue Transcriptomes section!

[Jan.31.2014]   
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[Jan.21.2014]   
The genome of the human, blood-feeding hookworm Necator americanus has been decoded!





GO Associations - A tool for viewing assigned ontologies for NemaGene transcripts

How to make use of this resource

AmiGO provides a means to identify available transcript resources for a given biological process, cellular component or molecular function of interest. The pie-charts provided at every node give a quick view of how much worm data is available under that term, and by clicking on the term itself you are presented with contig names mapping into that term, which can be used to search NemaGene for more information on that transcript assembly contig*.
*note: contig names in AmiGO are extended versions of the NemaGene contig names. To search for a contig name in NemaGene, just use the first 7 characters of the name (eg. AE00825 rather than AE00825_p10_2).

A Note on AmiGO From BDGP

With AmiGO, you can search for a GO term and view all gene products annotated to it, or search for a gene product and view all its associations. You can also browse the ontologies to view relationships between terms as well as the number of gene products annotated to a given term. AmiGO accesses the GO mySQL database; the browser and documentation are available from http://www.godatabase.org/dev/ -- for more information see: Gene Ontology Consortium.

last update: 8-1-10
Genomes
#Genes
AmiGO Data
Ancylostoma caninum_Annotation_EST (based on iprscan data release 13.1)
9113
Brugia malayi_Annotation (based on iprscan data release 13.1)
11749
Necator americanus gene annotations (based on iprscan data release 36.0)
19866
EST contigs
#Contigs
AmiGO Data
Ancylostoma caninum (based on iprscan data release 13.1)
5484
Ancylostoma ceylanicum (based on iprscan data release 13.1)
4953
Ascaris suum (based on iprscan data release 13.1)
17989
Brugia malayi (based on iprscan data release 13.1)
1609
Dirofilaria immitis (based on iprscan data release 13.1)
2534
Globodera pallida (based on iprscan data release 13.1)
2973
Globodera rostochiensis (based on iprscan data release 13.1)
2530
Haemonchus contortus (based on iprscan data release 13.1)
9842
Heterodera glycines (based on iprscan data release 13.1)
2026
Heterodera schachtii (based on iprscan data release 13.1)
1600
Meloidogyne arenaria (based on iprscan data release 13.1)
3372
Meloidogyne chitwoodi (based on iprscan data release 13.1)
5880
Meloidogyne hapla (based on iprscan data release 13.1)
11193
Meloidogyne incognita (based on iprscan data release 13.1)
9107
Meloidogyne javanica (based on iprscan data release 13.1)
5172
Meloidogyne paranaensis (based on iprscan data release 13.1)
2263
Nippostrongylus brasiliensis (based on iprscan data release 13.1)
3949
Ostertagia ostertagi (based on iprscan data release 13.1)
4659
Parastrongyloides trichosuri (based on iprscan data release 13.1)
4934
Pratylenchus penetrans (based on iprscan data release 13.1)
488
Pristionchus pacificus (based on iprscan data release 13.1)
2654
Radopholus similis (based on iprscan data release 13.1)
788
Steinernema carpocapsae (based on iprscan data release 16.1)
1592
Strongyloides ratti (based on iprscan data release 13.1)
5237
Strongyloides stercoralis (based on iprscan data release 13.1)
3479
Toxocara canis (based on iprscan data release 13.1)
2135
Trichinella spiralis (based on iprscan data release 13.1)
5958
Trichuris vulpis (based on iprscan data release 13.1)
1690
Xiphinema index (based on iprscan data release 13.1)
5485
Zeldia punctata (based on iprscan data release 13.1)
202

 
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