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Function & Expression : gene expression data

News

[Mar.12.2013] New Postdoc position available!

[Feb.11.2013] Ascaris suum microarray data now mirrored locally!

[Nov.1.2012] NemaGene Gene Tables now available

[Nov.1.2012] CDS for Bursaphelenchus xylophilus made available as a blastable database in NemaBLAST

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Free-living Nematodes Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis PB2801 Caenorhabditis remanei Pristionchus pacificus Zeldia punctata

Human Parasitic Nematodes Ancylostoma ceylanicum Ancylostoma duodenale Ascaris lumbricoides Brugia malayi Necator americanus Onchocerca volvulus Strongyloides stercoralis Trichinella spiralis Trichuris trichiura Wuchereria bancrofti

Plant Parasitic Nematodes Ditylenchus africanus Globodera pallida Globodera rostochiensis Heterodera glycines Heterodera schachtii Meloidogyne arenaria Meloidogyne artellia Meloidogyne chitwoodi Meloidogyne exigua Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pratylenchus penetrans Pratylenchus vulnus Rodopholus similis Xiphinema index

Entomopathogenic Nematodes Heterorhabditis bacteriophora Steinernema carpocapsae

Gene Expression Experiments

Based on the large amount of sequence data that has become available for the first time in many nematodes, we and our collaborators have started to investigate gene expression profiles in various species using RNAseq and microarray technology. This section of Nematode.net hosts the results of various RNAseq and microarray experiments, with the goal of meeting MIAME standards where possible.

Available experimental data:
(last updated 04-30-13)


Species	Project	Publication	Data type	Raw data	Processed data	Sample annotations	Experimental design	Array annotation	Methods	Other information
Ascaris suum	Ascaris suum microarray data	PMID:23572074	Microarray	compressed tarfile	compressed textfile	compressed xls file	compressed xls file	compressed textfile	compressed textfile	*note: Available in NCBI GEO: GSE36690
Ascaris suum	Ascaris suum RNAseq-based expression data	under review	RNAseq	NA	compressed textfile	NA	NA	NA	compressed textfile	NA
Brugia malayi	Brugia malayi annotation v2	PMID:15992941	Microarray	Zip file	NA	NA	NA	Excel spreadsheet	NA	Bmalayi gene fasta Bmalayi gene GO assignments *note: Available in NCBI GEO: GPL1483
Brugia malayi	Brugia malayi lifecycle stage microarray	PMID:19527522	Microarray	compressed tarfile	compressed file	NA	NA	compressed file	NA	Bmalayi interproscan results
Heterodera glycines	Affymetrix Soybean Genome Array GeneChip	PMID:19183474	Microarray	compressed tarfile	compressed tarfile	compressed tarfile	compressed tarfile	compressed tarfile	compressed tarfile	Hglycines contig fasta
Necator americanus	Necator americanus RNAseq-based expression data	under review	RNAseq	NA	compressed textfile	NA	NA	NA	NA	NA

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