Home : publications

 News
[Feb.14.2014]   
Explore our new Nematode Tissue Transcriptomes section!

[Jan.31.2014]   
NemaPath has been updated and expanded!

[Jan.21.2014]   
The genome of the human, blood-feeding hookworm Necator americanus has been decoded!





When using data and/or results from the The Genome Institute's Nematode.net website, please cite the following paper:

Martin J., Abubucker S., Heizer E., Taylor C.M. and Mitreva M. (2011) Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data Nucleic Acids Research first published online December 1, 2011 doi:10.1093/nar/gkr1194


Project Publications

In-Depth Proteomic and Glycomic Analysis of the Adult-Stage Cooperia oncophora Excretome/Secretome.
Borloo J, De Graef J, Peelaers I, Nguyen DL, Mitreva M, Devreese B, Hokke CH, Vercruysse J, Claerebout E, Geldhof P J Proteome Res. 2013 Sep 6;12(9):3900-11.

Publication Link

War of the worms: how plants fight underground attacks.
Kandoth PK, Mitchum MG Curr Opin Plant Biol. 2013 Aug;16(4):457-63.

Publication Link

Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes.
Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M Genome Biol Evol. 2013 Aug 19.

Publication Link

Discovery of anthelmintic drug targets and drugs using chokepoints in nematode metabolic pathways.
Taylor CM, Wang Q, Rosa BA, Huang SC, Powell K, Schedl T, Pearce EJ, Abubucker S, Mitreva M PLoS Pathog. 2013 Aug;9(8):e1003505.

Publication Link

A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora.
Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Kim KS, Spieth J, Sternberg PW, Wilson RK, Grewal PS PLoS One. 2013 Jul 18;8(7):e69618.

Publication Link

Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues.
Wang Z, Gao X, Martin J, Yin Y, Abubucker S, Rash AC, Li BW, Nash B, Hallsworth-Pepin K, Jasmer DP, Mitreva M Mol Genet Genomics. 2013 Jun;288(5-6):243-60.

Publication Link

TIMPs of parasitic helminths - a large-scale analysis of high-throughput sequence datasets.
Cantacessi C, Hofmann A, Pickering D, Navarro S, Mitreva M, Loukas A Parasit Vectors. 2013 May 30;6:156. doi: 10.1186/1756-3305-6-156. PubMed PMID: 23721526; PubMed Central PMCID: PMC3679795.

Publication Link

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans.
Desjardins CA, Cerqueira GC, Goldberg JM, Dunning Hotopp JC, Haas BJ, Zucker J, Ribeiro JM, Saif S, Levin JZ, Fan L, Zeng Q, Russ C, Wortman JR, Fink DL, Birren BW, Nutman TB Nat Genet. 2013 May;45(5):495-500.

Publication Link

Proteomic Analysis of Oesophagostomum dentatum (Nematoda) during Larval Transition, and the Effects of Hydrolase Inhibitors on Development.
Ondrovics M, Silbermayr K, Mitreva M, Young ND, Razzazi-Fazeli E, Gasser RB, Joachim A PLoS One. 2013 May 22;8(5):e63955. doi: 10.1371/journal.pone.0063955. Print 2013. PubMed PMID: 23717515; PubMed Central PMCID: PMC3661580.

Publication Link

Lung HIV Microbiome Project. Widespread colonization of the lung by Tropheryma whipplei in HIV infection.
Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, Mitreva M, Abubucker S, Martin J, Yao G, Campbell TB, Flores SC, Ackerman G, Stombaugh J, Ursell L, Beck JM, Curtis JL, Young VB, Lynch SV, Huang L, Weinstock GM, Knox KS, Twigg H, Morris A, Ghedin E, Bushman FD, Collman RG, Knight R, Fontenot AP Am J Respir Crit Care Med. 2013 May 15;187(10):1110-7. doi: 10.1164/rccm.201211-2145OC. PubMed PMID: 23392441.

Publication Link

Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues.
Wang Z, Gao X, Martin J, Yin Y, Abubucker S, Rash AC, Li BW, Nash B, Hallsworth-Pepin K, Jasmer DP, Mitreva M Mol Genet Genomics. 2013 Jun;288(5-6):243-60. doi: 10.1007/s00438-013-0743-y. Epub 2013 Apr 10. PubMed PMID: 23572074; PubMed Central PMCID: PMC3670759.

Publication Link

Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic nematodes, Ostertagia ostertagi and Cooperia oncophora.
Heizer E, Zarlenga DS, Rosa B, Gao X, Gasser RB, De Graef J, Geldhof P, Mitreva M BMC Genomics. 2013 Feb 22;14:118.

Publication Link

Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic ematodes, Ostertagia ostertagi and Cooperia oncophora.
Heizer E, Zarlenga DS, Rosa B, Gao X, Gasser RB, De Graef J, Geldhof P, Mitreva M BMC Genomics. 2013 Feb 22;14:118. doi: 10.1186/1471-2164-14-118. PubMed PMID: 23432754; PubMed Central PMCID: PMC3599158.

Publication Link

Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases.
Taylor CM, Martin J, Rao RU, Powell K, Abubucker S, Mitreva M PLoS Pathog. 2013 Feb;9(2):e1003149. doi: 10.1371/journal.ppat.1003149. Epub 2013 Feb 14. PubMed PMID: 23459584; PubMed Central PMCID: PMC3573124.

Publication Link

Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases.
Taylor CM, Martin J, Rao RU, Powell K, Abubucker S, Mitreva M PLoS Pathog. 2013 Feb;9(2):e1003149.

Publication Link

Gene expression analysis of ABC transporters in a resistant Cooperia oncophora isolate following in vivo and in vitro exposure to macrocyclic lactones.
De Graef J, Demeler J, Skuce P, Mitreva M, Von Samson-Himmelstjerna G, Vercruysse J, Claerebout E, Geldhof P Parasitology. 2013 Apr;140(4):499-508. doi: 10.1017/S0031182012001849. Epub 2013 Jan 2. PubMed PMID: 23279803; PubMed Central PMCID: PMC3690601.

Publication Link

A nuclear single-nucleotide polymorphism (SNP)potentially useful for the separation of Rhodnius prolixus from members of theRhodnius robustus cryptic species complex (Hemiptera: Reduviidae).
Pavan MG, Mesquita RD, Lawrence GG, Lazoski C, Dotson EM, Abubucker S, Mitreva M, Randall-Maher J, Monteiro FA Infect Genet Evol. 2013 Mar;14:426-33. doi: 10.1016/j.meegid.2012.10.018. Epub 2012 Dec 6. PubMed PMID: 23219914.

Publication Link

Inter and intra-specific diversity of parasites that cause lymphatic filariasis.
McNulty SN, Mitreva M, Weil GJ, Fischer PU Infect Genet Evol. 2013 Mar;14:137-46. doi: 10.1016/j.meegid.2012.11.002. Epub 2012 Nov 29. PubMed PMID: 23201850.

Publication Link

Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells
Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, Koutsovouls G, Kumar S, Blaxter ML, Davis RE Developmental Cell. 01 November 2012 doi:10.1016/j.devcel.2012.09.020

Publication Link

Transcriptomic and proteomic analyses of a wolbachia-free filarial parasite provide evidence of trans-kingdom horizontal gene transfer
McNulty SN, Abubucker S, Simon GM, Mitreva M, McNulty NP, Fischer K, Curtis KC, Brattig NW, Weil GJ, Fischer PU PLoS One. 2012;7(9):e45777

Publication Link

Exploring metazoan evolution through dynamic and holistic changes in protein families and domains
Wang Z, Zarlenga D, Martin J, Abubucker S, Mitreva M BMC Evol Biol. 2012 Aug 3;12:138

Publication Link

Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi
Li BW, Wang Z, Rush AC, Mitreva M, Weil GJ BMC Genomics. 2012 May 14;13:184

Publication Link

Effects of Doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo.
Rao RU, Huang Y, Abubucker S, Heinz M, Crosby SD, Mitreva M, Weil GJ J Biomed Sci. 2012 Feb 9;19(1):21 [Epub ahead of print]

Publication Link

The genome of a blood fluke associated with human cancer.
Mitreva M Nat Genet. 2012 Jan 27;44(2):116-8. doi: 10.1038/ng.1082.

Publication Link

Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data
Martin J, Abubucker S, Heizer E, Taylor CM and Mitreva M Nucleic Acids Research 2011 first published online December 1, 2011 doi:10.1093/nar/gkr1194

Publication Link

Stage-specific excretory-secretory small heat shock proteins from the parasitic nematode Strongyloides ratti- putative links to hosts intestinal mucosal defense system.
Younis AE, Geisinger F, Ajonina-Ekoti I, Soblik H, Steen H, Mitreva M, Erttmann KD, Perbandt M, Liebau E, Brattig NW 2011 The FEBS Journal Volume 278, Issue 18, pages 3319–3336, September 2011

Publication Link

HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization
Abubucker S, Martin J, Taylor CM, Mitreva M 2011 PLoS One 6(7): e21832. doi:10.1371/journal.pone.0021832

Publication Link

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE Genome Research 2011 gr.121426.111

Publication Link

RNAi Effector Diversity in Nematodes
Dalzell JJ, McVeigh P, Warnock ND, Mitreva M, Bird DM, Abad P, Fleming CC, Day TA, Mousley A, Marks NJ, Maule AG 2011 PLoS Negl Trop Dis 5(6): e1176. doi:10.1371/journal.pntd.0001176

Publication Link

Targeting Protein-Protein Interactions for Parasite Control
Taylor CM, Fischer K, Abubucker S, Wang Z, Martin J, Jiang D, Magliano M, Rosso M, Li B, Fischer P, Mitreva M 2011 PLoS ONE 6(4): e18381. doi:10.1371/journal.pone.0018381

Publication Link

Transcriptomes of Plant-Parasitic Nematodes
Jacob J, Mitreva M 2011 Genomics and Molecular Genetics of Plant-Nematode Interactions Part 2, 119-138, DOI: 10.1007/978-94-007-0434-3_7

Publication Link

The draft genome of the parasitic nematode Trichinella spiralis
Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L, Minx P, Yang S, Warren WC, Fulton RS, Bhonagiri V, Zhang X, Hallsworth-Pepin K, Clifton SW, McCarter JP, Appleton J, Mardis ER, Wilson RK Nature Genetics 2011 43:228-235

Publication Link

Gender-Associated Genes in Filarial Nematodes Are Important for Reproduction and Potential Intervention Targets
Li B, Rush AC, Jiang D, Mitreva M, Abubucker S, Weil GJ 2011 PLoS Negl Trop Dis 5(1): e947. doi:10.1371/journal.pntd.0000947

Publication Link

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention.
Cantacessi C, Gasser RB, Strube C, Schnieder T, Jex AR, Hall RS, Campbell BE, Young ND, Ranganathan S, Sternberg PW, Mitreva M 2011 Biotechnol Adv. 2011 May-Jun;29(3):261-71. Epub 2010 Dec 22

Publication Link

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach.
Cantacessi C, Mitreva M, Campbell BE, Hall RS, Young ND, Jex AR, Ranganathan S, Gasser RB. Infect Genet Evol. 2010 Dec;10(8):1199-207. Epub 2010 Aug 6. PubMed PMID: 20692378.

Publication Link

TrichinellaSpiralis: genomic application to control a zoonotic nematode.
Mitreva M, Jasmer DP. Infect Disord Drug Targets. 2010 Oct 1;10(5):376-84. PubMed PMID: 20701572.

Publication Link

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing.
Cantacessi C, Jex AR, Hall RS, Young ND, Campbell BE, Joachim A, Nolan MJ, Abubucker S, Sternberg PW, Ranganathan S, Mitreva M, Gasser RB. Nucleic Acids Res. 2010 Sep 1;38(17):e171. Epub 2010 Aug 3. PubMed PMID: 20682560; PubMed Central PMCID: PMC2943614.

Publication Link

Identification of hookworm DAF-16/FOXO response elements and direct gene targets.
Gao X, Wang Z, Martin J, Abubucker S, Zhang X, Mitreva M, Hawdon JM. PLoS One. 2010 Aug 19;5(8):e12289. PubMed PMID: 20808816; PubMed Central PMCID:PMC2924398.

Publication Link

Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.
Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I. PLoS Genet. 2010 Jul 29;6(7):e1001044. PubMed PMID: 20686661; PubMed Central PMCID: PMC2912396.

Publication Link

Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer.
McNulty SN, Foster JM, Mitreva M, Dunning Hotopp JC, Martin J, Fischer K, Wu B, Davis PJ, Kumar S, Brattig NW, Slatko BE, Weil GJ, Fischer PU. PLoS One. 2010 Jun 9;5(6):e11029. PubMed PMID: 20543958; PubMed Central PMCID: PMC2882956.

Publication Link

Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation.
Wang Z, Abubucker S, Martin J, Wilson RK, Hawdon J, Mitreva M. BMC Genomics. 2010 May 14;11:307. PubMed PMID: 20470405; PubMed Central PMCID: PMC2882930.

Publication Link

Massively parallel sequencing and analysis of the Necator americanus transcriptome.
Cantacessi C, Mitreva M, Jex AR, Young ND, Campbell BE, Hall RS, Doyle MA, Ralph SA, Rabelo EM, Ranganathan S, Sternberg PW, Loukas A, Gasser RB. PLoS Negl Trop Dis. 2010 May 11;4(5):e684. PubMed PMID: 20485481; PubMed Central PMCID: PMC2867931.

Publication Link

Helminth genomics: The implications for human health.
Brindley PJ, Mitreva M, Ghedin E, Lustigman S. PLoS Negl Trop Dis. 2009 Oct 26;3(10):e538. PubMed PMID: 19855829; PubMed Central PMCID: PMC2757907.

Publication Link

Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph.
Hao YJ, Montiel R, Abubucker S, Mitreva M, Simões N. Mol Biochem Parasitol. 2009 Oct 26. [Epub ahead of print] PubMed PMID: 19836423.

Publication Link

Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3.
Li BW, Rush AC, Mitreva M, Yin Y, Spiro D, Ghedin E, Weil GJ. BMC Genomics. 2009 Jun 15;10:267. PubMed PMID: 19527522; PubMed Central PMCID: PMC2708187.

Publication Link

Expressed sequence tags of the peanut pod nematode Ditylenchus africanus: the first transcriptome analysis of an Anguinid nematode.
Haegeman A, Jacob J, Vanholme B, Kyndt T, Mitreva M, Gheysen G. Mol Biochem Parasitol. 2009 Sep;167(1):32-40. Epub 2009 Apr 19. PubMed PMID: 19383517; PubMed Central PMCID:PMC2694848.

Publication Link

Role of horizontal gene transfer in the evolution of plant parasitism among nematodes.
Mitreva M, Smant G, Helder J, Methods Mol Biol. 2009;532:517-35. PMID: 19271205 [PubMed - in process]

Publication Link

Integrating genomics and phylogenetics in understanding the history of Trichinella species.
Zarlenga DS, Rosenthal B, Hoberg E, Mitreva M, Vet Parasitol. 2009 Feb 23;159(3-4):210-3. Epub 2008 Oct 22. PMID: 19046815 [PubMed - in process]

Publication Link

Sequence mining and transcript profiling to explore cyst nematode parasitism.
Elling AA, Mitreva M, Gai X, Martin J, Recknor J, Davis EL, Hussey RS, Nettleton D, McCarter JP, Baum TJ, BMC Genomics. 2009 Jan 30;10:58. PMID: 19183474 [PubMed - in process]

Publication Link

Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance.
Wang Z, Martin J, Abubucker S, Yin Y, Gasser RB, Mitreva M, BMC Evol Biol. 2009 Jan 28;9:23. PMID: 19175938 [PubMed - indexed for MEDLINE]

Publication Link

Strategies for Undertaking Expressed Sequence Tag (EST) Projects.
Clifton SW, Mitreva M, Methods Mol Biol. 2009;533:1-20. PMID: 19277564 [PubMed - in process]

Publication Link

Large-Scale Sequencing and Analytical Processing of ESTs.
Mitreva M, Mardis, Methods Mol Biol. 2009;533:1-35. PMID: 19277558 [PubMed - in process]

Publication Link

The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi.
Abubucker S, Zarlenga DS, Martin J, Yin Y, Wang Z, McCarter JP, Gasbarree L, Wilson RK, Mitreva M. Vet Parasitol. 2009 May 26;162(1-2):89-99. Epub 2009 Feb 27. PubMed PMID: 19346077; PubMed Central PMCID: PMC2677129.

Publication Link

Exploring the transcriptome of the burrowing nematode Radopholus similis.
Jacob J, Mitreva M, Vanholme B, Gheysen G. Exploring the transcriptome of the burrowing nematode Radopholus similis. Mol Genet Genomics. 2008 Jul;280(1):1-17. Epub 2008 Apr 2. PMID: 18386064 [PubMed - in process]

Publication link

Integrating genomics and phylogenetics in understanding the history of Trichinella species
Zarlenga DS, Rosenthal B., Hoberg E., Mitreva M., Integrating genomics and phylogenetics in understanding the history of Trichinella species. Veterinary Parasitology Oct 2008

Publication Link

Molecular Approaches Toward Resistance to Plant-Parasitic Nematodes
JP McCarter, Molecular approaches toward resistance to plant-parasitic nematodes. Chapter in Cell Biology of Plant Nematode Parasitism, Berg, R.H. and C.G. Taylor eds., Series: Plant Cell Monographs, Vol. 15 Springer-Verlag Press, Berlin

PDF File

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism
Dietrich C, Clifton SW, Schuster LN, Chinwalla A,Delehaunty K, Dinkelacker I, Fulton L, Fulton R,Godfrey J, Minx P, Mitreva M, Roeseler W, Tian H,Witte H, Yang SP, Wilson RK, Sommer RJ, The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nat Genet. 2008 Oct, Vol 40(10): 1193-8

Publication Link

Nematode.net update 2008:improvements enabling more efficient data mining and comparative nematode genomics
Martin J, Abubucker S, Wylie T, Yin Y, Wang Z,Mitreva M, Nematode.net update 2008:improvements enabling more efficient data mining and comparative nematode genomics. Nucleic Acids Research, 2009, Vol. 37, Database issue D571-D578

Publication Link

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
Todd Wylie, John Martin, Sahar Abubucker, Yong Yin, David Messina, Zhengyuan Wang, James P McCarter, and Makedonka Mitreva, NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.BMC Genomics. 2008; 9: 525

Publication Link

Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascaris suum and Haemonchus contortus with the Free-living Caenorhabditis elegans
Yin Y, Martin J, Abubucker S, Scott AL, McCarter JP, Wilson RK, Jasmer DP, Mitreva M, Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascaris suum and Haemonchus contortus with the Free-living Caenorhabditis elegans. PLoS Negl Trop Dis. 2008 Aug 6, Vol 280(1): 1-17 PMID: 18386064 [PubMed - indexed for MEDLINE]

Publication Link

Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis
Mitreva M, Jasmer DP, Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis. Parasitology. 2008 Jul, Vol 135(8): 869-80 PMID: 18598573 [PubMed - indexed for MEDLINE]

Publication Link

Biology and genome of Trichinella spiralis
M. Mitreva, 2006, Biology and genome of Trichinella spiralis, Wormbook

Publication Link

Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. 2006 , Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species., Genome Biol. 2006 Aug 14;7(8):R75

Publication Link

Detection of Proteins Secreted by the Plant-parasitic Nematode Heterodera schachtii Based on Expressed Sequence Tags Analysis
Vanholme, B., M. Mitreva, W. V. Criekinge, M. Logghe, J. P. McCarter, and G. Gheysen. 2005, Detection of Proteins Secreted by the Plant-parasitic Nematode Heterodera schachtii Based on Expressed Sequence Tags Analysis,Parasitology Research, 98(5):414-24

Publication Link

Brugia malayi: effects of radiation and culture on gene expression in infective larvae
Li BW, Rush AC, Weil GJ, McCarter JP, Mitreva M. 2006, Brugia malayi: effects of radiation and culture on gene expression in infective larvae, Mol Biochem Parasitol. 2006 Oct;149(2):201-7

Publication Link

Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis
Ben-Wen Li, AC Rush, SD Crosby, W Warren, SA Williams, M. Mitreva, GJ Weil. 2005. Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Molecular and Biochemical Parasitology, 143: 49-57

Publication Link

A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita
Mitreva-Dautova M, Roze E, Overmars H, de Graaff L, Schots A, Helder J, Goverse A, Bakker J, Smant G. 2006, A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita, Mol Plant Microbe Interact. 2006 May;19(5):521-9

Publication Link

Identification and Analysis of Genes Expressed in the Adult Filiarial Nematode Dirofilaria immitis
Yin, Y., J. Martin, J. P. McCarter, S. W. Clifton, R. K. Wilson, and M. Mitreva. 2006. Identification and Analysis of Genes Expressed in the Adult Filiarial Nematode Dirofilaria immitis. International Journal of Parasitology, 36(7):829-39.

Publication Link

Detection of Proteins Secreted by the Plant-parasitic Nematode Heterodera schachtii
Vanholme, B., M. Mitreva, W. V. Criekinge, M. Logghe, J. P. McCarter, and G. Gheysen. 2006. Detection of Proteins Secreted by the Plant-parasitic Nematode Heterodera schachtii. Parasitology Research, 98(5):414-24.

Publication Link

From genomics to chemical genomics: new developments in KEGG
Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., and Hirakawa, M.

Publication Link

A White Paper on Nematode Comparative Genomics
Bird, D. M., M. L. Blaxter, J. P. McCarter, M. Mitreva, P. W. Sternberg, W. K. Thomas. 2005. A White Paper on Nematode Comparative Genomics. Journal of Nematology, 37(4):408-416.


Nematode Gene Sequences: Update for December, 2005
McCarter, J. P., D. M. Bird, M. Mitreva. 2005. Nematode Gene Sequences: Update for December 2005. Journal of Nematology, 37(4):417-421.

PDF File

Comparative genomics of nematodes.
Mitreva M,Blaxter ML,Bird DM,McCarter JP. 2005. Comparative genomics of nematodes. Trends Genet. 2005 Oct.21(10):573-81.

Publication Link

Expressed Sequence Tags From Life Cycle Stages of Trichinella spiralis: Application to Biology and Parasite Control
Mitreva, M., J. Appleton, J. P. McCarter, and D. P. Jasmer. 2005. Expressed Sequence Tags From Life Cycle Stages of Trichinella spiralis: Application to Biology and Parasite Control. Veterinary Parasitology, 132:13-17.

Publication Link

Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis
Li B, Rush AC, Crosby SD, Warren W, Williams SA, Mitreva M, Weil GJ. 2005. Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Molecular and Biochemical Parasitology, 143: 49-57.

Publication Link

An Expressed Sequence Tag Analysis of the Life-cycle of the Parasitic Nematode Strongyloides ratti
Thompson, F. J., M. D. Mitreva, G. L. A. Barker, J. Martin, R. H. Waterston, J. P. McCarter, and M. E. Viney. 2005. An Expressed Sequence Tag Analysis of the Life-cycle of the Parasitic Nematode Strongyloides ratti. Molecular and Biochemical Parasitology, 142:32-46

Publication Link

Investigating Hookworm Genomes by Comparative Analysis of Two Ancylostoma Species
Mitreva, M., J. P. McCarter, P. Arasu, J. Hawdon, J. Martin, M. Dante, T. Wylie, J. Xu, J. E. Stajich, V. Kapulkin, S. W. Clifton, R. H. Waterston, and R. Wilson. 2005. Investigating Hookworm Genomes by Comparative Analysis of Two Ancylostoma Species. BMC Genomics, 6:58,1-19.

Publication Link

RNA Interference-based Discovery and Validation of New Drug Targets in Filarial Nematodes
Behm, C. A., M. M. Bendig, J. P. McCarter, A. E. Sluder. 2005. RNA Interference-based Discovery and Validation of New Drug Targets in Filarial Nematodes. Trends in Parasitology, 21:97-100.

Publication Link

A transcriptomic analysis of the phylum Nematoda.
Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. 2004. Nat Genet. 2004 Nov 14. [Epub ahead of print]

Publication Link

mRNA Sequences for Haemonchus contortus intestinal cathepsin B-like cysteine proteases display an extreme in abundance and diversity among mammalian parasitic nematodes
Jasmer, D. P., M. D. Mitreva, J. P. McCarter. 2004. mRNA Sequences for Haemonchus contortus intestinal cathepsin B-like cysteine proteases display an extreme in abundance and diversity among mammalian parasitic nematodes. Molecular and Biochemical Parasitology, 137:297-305.

PDF File

Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages
Mitreva, M., D. P. Jasmer, J. Appleton, J. Martin, M. Dante, T. Wylie, S. W. Clifton, and R. H. Waterston, and J. P., McCarter. 2004. Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages. Molecular and Biochemical Parasitology, 137:277-291.

PDF File

Genomic Filtering, an Approach to Discovering Novel Trends in Parasitology
McCarter, J. P. 2004. Genomic Filtering, an Approach to Discovering Novel Antiparasitics. Trends in Parasitology, 20:462-468.

PDF File

A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans.
Mitreva M, Elling AA, Dante M, Kloek AP, Kalyanaraman A, Aluru S, Clifton SW, Bird DM, Baum TJ, McCarter JP. A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Molecular Genetics and Genomics, 272:2, 138-148, 2004.

Publication Link

Comparative Genomics of Gene Expression in the Parasitic and Free-living Nematodes Strongyloides stercoralis and Caenorhabditis elegans
Mitreva, M. D., J. P., McCarter, J. Martin, M. Dante, T. Wylie, B. Chiapelli, D. Pape, S. W. Clifton, T. B. Nutman, and R. H. Waterston. Comparative Genomics of Gene Expression in the Parasitic and Free-living Nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Research, 2004 Feb.14(2):209-20.

PDF File

Nematode.net: A Tool for Navigating Sequences from Parasitic and Free-living Nematodes
Wylie, T., Martin J.C., Dante M., Mitreva M.D., Clifton S.W., Chinwalla A., Waterston R.H., Wilson R.K., and McCarter J.P. 2004. Nematode.net: A Tool for Navigating Sequences from Parasitic and Free-living Nematodes. Nucleic Acids Research, 2004 32:D423-D426.

PDF File

400,000 Nematode ESTs on the Net
Parkinson, J., M. Mitreva, N. Hall, M. Blaxter, and J. P. McCarter. 400,000 Nematode ESTs on the Net. Trends in Parasitology, 19:283-286, 2003.

PDF File

Horizontally Transferred Genes in Plant-parasitic Nematodes: A High-Throughput Genomic Approach
Scholl, E. H., J. L. Thorne, J. P. McCarter, D. McK. Bird. Horizontally Transferred Genes in Plant-parasitic Nematodes: A High-Throughput Genomic Approach, Genome Biology, 4:R39, 1-12, 2003.

Publication Link

Analysis and Functional Classification of Transcripts from the Nematode Meloidogyne incognita
McCarter, J. P., M. D. Mitreva, J. Martin, M. Dante, T. Wylie, U. Rao, D. Pape, Y. Bowers, B. Theising, C. Murphy, A. P. Kloek, B. Chiapelli, S. W. Clifton, D. McK. Bird, and R. H. Waterston. 2003. Analysis and Functional Classification of Transcripts from the Nematode Meloidogyne incognita. Genome Biology, 4:R26,1-19, 2003.

PDF File

Nematode Gene Sequences, Update for December, 2003
McCarter, J. P., M. Mitreva, S. W. Clifton, D. McK. Bird and R. H. Waterston. 2003. Nematode Gene Sequences, Update for December 2003. Journal of Nematology, 2003.

PDF File

Nematode Gene Sequences, Update for June 2002
McCarter, J. P., S. W. Clifton, D. McK. Bird and R. H. Waterston. 2002. Nematode Gene Sequences, Update for June 2002. Journal of Nematology, 34(2):71-74.

PDF File

Nematode Gene Sequences, Update for December 2000
McCarter, J. P., D. McK. Bird, S. W. Clifton, and R. H. Waterston. 2000. Nematode Gene Sequences, Update for December 2000. Journal of Nematology, 32(4):331-333.

PDF File

Rapid Gene Discovery in Plant Parasitic Nematodes Via Expressed Sequence Tags
McCarter, J., P. Abad, J. T. Jones, and D. Bird. 2000. Rapid Gene Discovery in Plant Parasitic Nematodes Via Expressed Sequence Tags. Nematology, 2(7):719-731.

Publication Link




 
  Nematode.net v4.0           Copyright Statement
  User support forum Nematode.net User Support
Webmaster       nematode@genome.wustl.edu
The Genome Institute Washington University School of Medicine