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 News
[Mar.12.2013]   New Postdoc position available!
[Feb.11.2013]   Ascaris suum microarray data now mirrored locally!
[Nov.1.2012]   NemaGene Gene Tables now available
[Nov.1.2012]   CDS for Bursaphelenchus xylophilus made available as a blastable database in NemaBLAST





Nematode.net Data Download - Retrieve data referenced in publication and/or other generally useful resources
Species Publication Description Data
Acanthocheilonema viteae Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer Wolbachia endosymbiont data files link
Ancylostoma caninum   Gene annotations (10-16-2006) link
Ancylostoma caninum   Sanger EST contigs & clusters link
Ancylostoma caninum   Transcript assembly link
Ancylostoma caninum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ancylostoma ceylanicum   Sanger EST contigs & clusters link
Ancylostoma ceylanicum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ascaris suum   Active module files for A.suum microarray data by cytoscape link
Ascaris suum Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells Data files (genome & cDNA) link
Ascaris suum Small RNAs from the Germline and Embryos of Ascaris Reveal their Conservation, Divergence, and Surprising Early Expression in Nematodes Data files (genome & cDNA) link
Ascaris suum   Database of bacterial genomes from GenBank (Jan.2012) plus an Ascaris suum genomic assembly link
Ascaris suum   Geneset CDS fasta (as of 11-1-2012) link
Ascaris suum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ascaris suum   Sanger EST contigs & clusters link
Ascaris suum   Whole Genome Shotgun data (11-7-2006) link
Brugia malayi Targeting protein-protein interactions for parasite control Chokepoint data files link
Brugia malayi   Geneset CDS fasta (WS230) link
Brugia malayi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Brugia malayi   Sanger EST contigs & clusters link
Brugia malayi Effects of Doxycycline on Gene Expression in Wolbachia and Brugia malayi Adult Female Worms In Vivo Wolbachia doxycycline study link
Bursaphelenchus xylophilus   Geneset CDS fasta (WS230) link
Caenorhabditis brenneri Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis briggsae Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis elegans Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis elegans   Geneset CDS fasta (WS230) link
Caenorhabditis elegans NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Caenorhabditis elegans   Pyrosequencing data files (5-12-2011) link
Caenorhabditis japonica Targeting protein-protein interactions for parasite control Chokepoint data files link
Cooperia oncophora   Transcript assembly link
Caenorhabditis remanei Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis remanei   Sanger EST contigs & clusters link
Dirofilaria immitis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Dirofilaria immitis   Sanger EST contigs & clusters link
Dictyocaulus viviparus   Transcript assembly link
Ditylenchus africanus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ditylenchus africanus   Sanger EST contigs & clusters link
Globodera pallida NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Globodera pallida   Sanger EST contigs & clusters link
Globodera rostochiensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Globodera rostochiensis   Sanger EST contigs & clusters link
Haemonchus contortus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Haemonchus contortus   Sanger EST contigs & clusters link
Heterodera glycines NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Heterodera glycines   Sanger EST contigs & clusters link
Heterodera schachtii NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Heterodera schachtii   Sanger EST contigs & clusters link
Heterorhabditis bacteriophora   Transcript assembly link
Homo sapiens   Geneset CDS fasta (GRCh37.66) link
Loa loa   Geneset CDS fasta (as of 11-1-2012) link
Meloidogyne arenaria NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne arenaria   Sanger EST contigs & clusters link
Meloidogyne chitwoodi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne chitwoodi   Sanger EST contigs & clusters link
Meloidogyne hapla Targeting protein-protein interactions for parasite control Chokepoint data files link
Meloidogyne hapla   Geneset CDS fasta (WS230) link
Meloidogyne hapla NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne hapla   Sanger EST contigs & clusters link
Meloidogyne incognita Targeting protein-protein interactions for parasite control Chokepoint data files link
Meloidogyne incognita NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne incognita   Sanger EST contigs & clusters link
Meloidogyne javanica NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne javanica   Sanger EST contigs & clusters link
Meloidogyne paranaensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne paranaensis   Sanger EST contigs & clusters link
Necator americanus   Transcript assembly link
Nippostrongylus brasiliensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Nippostrongylus brasiliensis   Sanger EST contigs & clusters link
Oesophagostomum dentatum   Transcript assembly link
Onchocerca flexuosa NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Onchocerca flexuosa   Sanger EST contigs & clusters link
Onchocerca flexuosa   Transcriptome and protein files link
Onchocerca flexuosa Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer Wolbachia endosymbiont data files link
Ostertagia ostertagi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ostertagia ostertagi   Sanger EST contigs & clusters link
Ostertagia ostertagi   Transcript assembly link
Parastrongyloides trichosuri NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Parastrongyloides trichosuri   Sanger EST contigs & clusters link
Pratylenchus penetrans NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Pratylenchus penetrans   Sanger EST contigs & clusters link
Pristionchus pacificus Targeting protein-protein interactions for parasite control Chokepoint data files link
Pristionchus pacificus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Pristionchus pacificus   Sanger EST contigs & clusters link
Radopholus similis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Radopholus similis   Sanger EST contigs & clusters link
Schistosoma japonicum   Geneset CDS fasta (as of 11-1-2012) link
Schistosoma mansoni   Geneset CDS fasta (as of 11-1-2012) link
Strongyloides ratti NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Strongyloides ratti   Sanger EST contigs & clusters link
Strongyloides stercoralis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Strongyloides stercoralis   Sanger EST contigs & clusters link
Toxocara canis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Toxocara canis   Sanger EST contigs & clusters link
Teladorsagia circumcincta   Transcript assembly link
Trichostrongylus colubriformis   Transcript assembly link
Trichuris muris NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Trichuris muris   Sanger EST contigs & clusters link
Trichinella spiralis Targeting protein-protein interactions for parasite control Chokepoint data files link
Trichinella spiralis   Geneset CDS fasta (as of 11-1-2012) link
Trichinella spiralis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Trichinella spiralis   Sanger EST contigs & clusters link
Xiphinema index NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Xiphinema index   Sanger EST contigs & clusters link
Zeldia punctata NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Zeldia punctata   Sanger EST contigs & clusters link


Sanger EST trace FTP:

The easiest way to access the EST trace FTP is through your browser using these links:

Download traces
Download traces (HTTP link for users behind firewalls)

 Alternatively, you may ftp to our ftp site and pick up traces in this manner:

ftp genome.wustl.edu
login: anonymous
passwd: (your_e-mail_adress)
cd /pub/est/pnp
bin
get (trace tarball containing your traces of interest)
So, using kp01a05.y1 as an example, we will walk through downloading the files associated with this EST:

ftp genome.wustl.edu Enter command from a UNIX prompt to access the FTP site.
login: anonymous Login anonymously.
passwd: janedoe@address.com Enter your email address at the password prompt.
bin Sets system to binary mode.
cd /pub/est/pnp Change directory to the pnp repository.
ls -al This command will list the contents of whatever directory you are in.
get kp.tar.gz Download the set of traces starting with the prefix kp.
help Help displays a list of FTP commands - help (command) reveals more information.
tar zxvf kp.tar.gz Extract the downloaded tarball which will expand into a directory structure organized by the first few characters of the name.

 
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